Deatailed information for gene ENSG00000156273
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00009960
- Gene Symbol: BACH1
- Ensembl ID: ENSG00000156273
-
Gene locus: chr21:29299415-29346148
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs,
- Regulatory cohesin (double-evidenced):
chr21-29051564-29051818,
chr21-29053116-29053515,
chr21-29054263-29054943,
chr21-29057293-29057849,
chr21-29058619-29059007,
chr21-29063826-29064273,
chr21-29064621-29065502,
chr21-29066238-29066599,
chr21-29071350-29071693,
chr21-29072018-29074622,
chr21-29074884-29075433,
chr21-29075829-29075966,
chr21-29076222-29078000,
chr21-29079180-29079737,
chr21-29080209-29080956,
chr21-29081224-29081617,
chr21-29087569-29094441,
chr21-29094711-29095387,
chr21-29095862-29096053,
chr21-29096546-29097199,
chr21-29098256-29099251,
chr21-29099455-29101135,
chr21-29102975-29105726,
chr21-29106649-29107301,
chr21-29113495-29113864,
chr21-29114089-29115572,
chr21-29117017-29117809,
chr21-29121756-29123302,
chr21-29124971-29125928,
chr21-29150671-29151440,
chr21-29152909-29153775,
chr21-29155290-29156050,
chr21-29157109-29157760,
chr21-29159810-29160209,
chr21-29161044-29161329,
chr21-29161992-29169830,
chr21-29170354-29172726,
chr21-29174072-29177013,
chr21-29177913-29178352,
chr21-29180907-29186165,
chr21-29187616-29191797,
chr21-29192039-29192372,
chr21-29192661-29199386,
chr21-29225309-29226765,
chr21-29227909-29229125,
chr21-29229492-29236751,
chr21-29236953-29240287,
chr21-29240500-29240763,
chr21-29244788-29245857,
chr21-29247845-29249166,
chr21-29249418-29250251,
chr21-29267480-29267745,
chr21-29268171-29268856,
chr21-29295121-29295701,
chr21-29296491-29303668,
chr21-29304154-29305335,
chr21-29305747-29309169,
chr21-29313792-29314472,
chr21-29315462-29315610,
chr21-29315990-29317552,
chr21-29318199-29318712,
chr21-29319627-29319847,
chr21-29320109-29320295,
chr21-29320703-29320863,
chr21-29321259-29321494,
chr21-29321914-29322368,
chr21-29322647-29323646,
chr21-29323911-29324647,
chr21-29324965-29325251,
chr21-29327253-29327738,
chr21-29329533-29331103,
chr21-29331917-29333531,
chr21-29334032-29336486,
chr21-29336792-29337311,
chr21-29337668-29337930,
chr21-29339151-29339890,
chr21-29340708-29341150,
chr21-29341735-29344513,
chr21-29345772-29351015,
chr21-29457390-29457655,
chr21-29459661-29460114,
chr21-29463783-29464015,
chr21-29465600-29465837,
chr21-29469142-29469499,
chr21-29470559-29470708,
chr21-29472555-29472793,
chr21-29473888-29474622,
chr21-29475468-29478798,
chr21-29481578-29482796,
chr21-29485004-29485661,
chr21-29495641-29495966,
chr21-29496266-29496695,
chr21-29498142-29498791,
chr21-29499024-29500817,
chr21-29684505-29684809,
chr21-29688617-29688835,
chr21-29805135-29805399,
chr21-29807171-29807440,
chr21-29813103-29813288,
chr21-29817400-29817925,
chr21-29818516-29818937,
chr21-29821192-29821694,
chr21-29827930-29828093,
chr21-29828792-29830452,
chr21-29843651-29844212,
chr21-29847336-29847578,
chr21-29847880-29847942,
chr21-29848227-29851703,
chr21-29854684-29855206,
chr21-29867790-29868026,
chr21-29870913-29871168,
chr21-30191933-30192080,
chr21-30193663-30195325,
chr21-31078642-31079257,
chr21-31081209-31081500,
chr21-31082992-31084009,
chr21-31084776-31087917,
chr21-31088221-31089142,
chr21-31096520-31101905,
chr21-31151663-31152151,
chr21-31155559-31155820,
chr21-31159176-31159441,
chr21-31160575-31161697,
chr21-31162086-31162400,
chr21-31162855-31163109,
chr21-31164095-31164388,
chr21-31172023-31172627,
chr21-31173153-31175305,
-
Co-expression with cohesin genes Rho = 0.3897
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.350
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.865
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,DU145,Keratinocytes192627,K1,hTERT-HME1,Spleen,H1-Mesenchymal,H1-Mesendoderm,Olfactory,Hepatocyte-H9,GM19239,HEK293T,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,H1-Trophectoderm,SU-DHL-2,H9-hESC,KU-19-19,Primed-hESC,NCI-H1437,iPSC,Liver,ARPE-19,HCT-116,Germinal-Center-B,REC-1,Hep-G2,HT-1197,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,Brain-Pericyte,NaiveB,U-937,HUES64,SU-DHL-4,H1-NPC,CyT49-hESC,HUVEC,HL-60,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,KBM-7,Jurkat,CC-2551,CyT49-Gut,HAP1,HFF-hTERT
- Related loop:
chr21:29050000-29075000~~chr21:29300000-29325000,
chr21:29075000-29100000~~chr21:29275000-29300000,
chr21:29075000-29100000~~chr21:29325000-29350000,
chr21:29075000-29100000~~chr21:29350000-29375000,
chr21:29089019-29091765~~chr21:29347581-29349365,
chr21:29089067-29091786~~chr21:29347632-29349367,
chr21:29089072-29091405~~chr21:29347617-29349359,
chr21:29089160-29091117~~chr21:29347755-29349310,
chr21:29089167-29091099~~chr21:29347660-29349347,
chr21:29089188-29091090~~chr21:29347684-29349339,
chr21:29089226-29091194~~chr21:29297826-29300567,
chr21:29089226-29091194~~chr21:29347657-29349380,
chr21:29089236-29091115~~chr21:29347637-29349372,
chr21:29089247-29091085~~chr21:29347692-29349326,
chr21:29089253-29091784~~chr21:29347649-29349937,
chr21:29089253-29091866~~chr21:29347600-29349350,
chr21:29089261-29091354~~chr21:29347652-29349375,
chr21:29089274-29091757~~chr21:29347569-29349367,
chr21:29089288-29091868~~chr21:29347684-29349364,
chr21:29089299-29091014~~chr21:29347749-29349306,
chr21:29089315-29091812~~chr21:29347653-29349368,
chr21:29089325-29091118~~chr21:29297646-29300784,
chr21:29089332-29090990~~chr21:29347656-29349372,
chr21:29089350-29091002~~chr21:29347655-29349349,
chr21:29089353-29091857~~chr21:29347586-29349777,
chr21:29089362-29091799~~chr21:29347653-29349341,
chr21:29089364-29091181~~chr21:29347677-29349847,
chr21:29089382-29091075~~chr21:29347811-29349358,
chr21:29089486-29091829~~chr21:29347582-29349316,
chr21:29089531-29091070~~chr21:29347741-29349366,
chr21:29089580-29091034~~chr21:29347821-29349746,
chr21:29091949-29093553~~chr21:29347639-29349364,
chr21:29091975-29093600~~chr21:29347653-29349368,
chr21:29092103-29093370~~chr21:29347649-29349937,
chr21:29100000-29125000~~chr21:29275000-29300000,
chr21:29100000-29125000~~chr21:29350000-29375000,
chr21:29150000-29175000~~chr21:29275000-29300000,
chr21:29150000-29175000~~chr21:29325000-29350000,
chr21:29150000-29175000~~chr21:29350000-29375000,
chr21:29162298-29165502~~chr21:29297765-29300738,
chr21:29162305-29165453~~chr21:29297767-29300990,
chr21:29162305-29165453~~chr21:29347649-29349937,
chr21:29162307-29165517~~chr21:29297019-29300536,
chr21:29162310-29165464~~chr21:29297711-29300996,
chr21:29162316-29165407~~chr21:29347639-29349336,
chr21:29162347-29165506~~chr21:29347569-29349367,
chr21:29162377-29165492~~chr21:29297770-29301094,
chr21:29162378-29165498~~chr21:29297718-29300698,
chr21:29162378-29165498~~chr21:29347586-29349777,
chr21:29162871-29165217~~chr21:29297676-29300550,
chr21:29163284-29165488~~chr21:29347632-29349367,
chr21:29163305-29165274~~chr21:29297780-29300635,
chr21:29163333-29165304~~chr21:29297741-29300792,
chr21:29163333-29165304~~chr21:29347811-29349358,
chr21:29163439-29165245~~chr21:29347811-29349339,
chr21:29163509-29165242~~chr21:29347678-29349344,
chr21:29163629-29165264~~chr21:29297785-29301017,
chr21:29163629-29165264~~chr21:29347677-29349365,
chr21:29163714-29165477~~chr21:29347632-29349309,
chr21:29163725-29165459~~chr21:29347656-29349372,
chr21:29163734-29165276~~chr21:29347684-29349339,
chr21:29163746-29165675~~chr21:29347638-29349313,
chr21:29163756-29165286~~chr21:29347699-29349347,
chr21:29163801-29165267~~chr21:29347792-29349359,
chr21:29163801-29165269~~chr21:29347138-29349317,
chr21:29175000-29200000~~chr21:29275000-29300000,
chr21:29175000-29200000~~chr21:29300000-29325000,
chr21:29175000-29200000~~chr21:29350000-29375000,
chr21:29181177-29183351~~chr21:29297767-29300990,
chr21:29181313-29182963~~chr21:29347735-29349361,
chr21:29195502-29197292~~chr21:29297767-29300990,
chr21:29225000-29250000~~chr21:29325000-29350000,
chr21:29225000-29250000~~chr21:29350000-29375000,
chr21:29230443-29234332~~chr21:29297765-29300738,
chr21:29232431-29234308~~chr21:29347637-29349372,
chr21:29232806-29234518~~chr21:29297832-29300927,
chr21:29235070-29236701~~chr21:29297903-29299607,
chr21:29267340-29269377~~chr21:29347233-29349373,
chr21:29275000-29300000~~chr21:29675000-29700000,
chr21:29275000-29300000~~chr21:29800000-29825000,
chr21:29275000-29300000~~chr21:31150000-31175000,
chr21:29300000-29325000~~chr21:33200000-33225000,
chr21:29347639-29349364~~chr21:29848859-29851155,
chr21:29350000-29375000~~chr21:29450000-29475000,
chr21:29350000-29375000~~chr21:29475000-29500000,
chr21:29350000-29375000~~chr21:29675000-29700000,
chr21:29350000-29375000~~chr21:29800000-29825000,
chr21:29350000-29375000~~chr21:29825000-29850000,
chr21:29350000-29375000~~chr21:29850000-29875000,
chr21:29350000-29375000~~chr21:30175000-30200000,
chr21:29350000-29375000~~chr21:31075000-31100000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, GSE43070, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, 4DNFIBN9K4V9, ENCSR852KQC, ENCSR361AYD, 4DNFIDSWKFF5, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, 4DNFI9VXTBE2, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, GSE99541, ENCSR668RDP, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, 4DNFIJ5DQZVK, ENCSR658RQQ, ENCSR299VMZ, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFI8Y9SRP2, 4DNFIK61ILGM, GSE108869, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, 4DNFI7XAZNNQ, ENCSR527RXH, GSE105028, ENCSR833CMG, 4DNFIQWD8ZYD, GSE87112, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, 4DNFIB7QTIMH, ENCSR146FPM, 4DNFIOX3BGNE, GSE69643, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, GSE52457, 4DNFIBT4EAKN, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIBRSIPE4, 4DNFI6CWNUFL, 4DNFI5CGQ46V, 4DNFIR8OU6QJ, 4DNFIE8E4ANZ, GSE120294, GSE84022, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIFHU75I5, 4DNFIYD8LO9Z, ENCSR123UVP, 4DNFIL9M97T2, 4DNFIJBJ6QVH, 4DNFI3A3VYWU, 4DNFIM2BMJ33, 4DNFIX4PJKXZ, GSE165038, 4DNFIALNLR78, 4DNFIBY3UHJB, 4DNFIYDBBSE3, ENCSR386KHY, 4DNFIEJEFCAM, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, GSE48592, ENCSR255XYX, ENCSR404HWQ, 4DNFIE5TEYK7, ENCSR323QIP, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, ENCSR094EIC, GSE58752, GSE116869, 4DNFI8649RQJ, 4DNFIRZA6EV6, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFIILDWK8M, ENCSR866FWQ, 4DNFI6EIFUZI, 4DNFII6AN691, GSE131580, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, ENCSR752QCX, ENCSR128RPG, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFI8JFOAJT, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI5LCW273, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: HL-60,SLK,K-562,MCF-10A,CMK,HeLa-S3
- Cohesin-DEGs, number of studies: 8
- Cohesin-DEGs, study: GSE101921,GSE131581,GSE154086,GSE138937,GSE131448,GSE108869,GSE130558
- Cohesin-DEGs, subunit: WAPL,CTCF,Rad21,SA2