Deatailed information for gene ENSG00000155307
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00009854
- Gene Symbol: SAMSN1
- Ensembl ID: ENSG00000155307
-
Gene locus: chr21:14485227-14658821
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs
- Regulatory cohesin (double-evidenced):
chr21-14054674-14055180,
chr21-14055484-14059912,
chr21-14061942-14065239,
chr21-14070030-14074512,
chr21-14074982-14076805,
chr21-14241467-14241660,
chr21-14243210-14243271,
chr21-14281105-14281959,
chr21-14295215-14295291,
chr21-14296029-14296203,
chr21-14297072-14297309,
chr21-14376765-14377390,
chr21-14378678-14379134,
chr21-14382340-14384384,
chr21-14389947-14390070,
chr21-14451676-14455243,
chr21-14480065-14481269,
chr21-14481676-14484519,
chr21-14485378-14486503,
chr21-14486972-14489793,
chr21-14493049-14494367,
chr21-14495023-14495539,
chr21-14497768-14500804,
chr21-14508533-14509068,
chr21-14509849-14510528,
chr21-14513466-14513776,
chr21-14514091-14515251,
chr21-14515813-14516554,
chr21-14518725-14524191,
chr21-14524873-14526196,
chr21-14526494-14529969,
chr21-14530357-14536642,
chr21-14537276-14539605,
chr21-14541246-14550672,
chr21-14551605-14552002,
chr21-14557307-14558028,
chr21-14559082-14559732,
chr21-14567228-14570286,
chr21-14572129-14572516,
chr21-14578153-14578409,
chr21-14581372-14582622,
chr21-14582966-14584059,
chr21-14584317-14585946,
chr21-14587787-14588401,
chr21-14588871-14589251,
chr21-14589461-14593131,
chr21-14593692-14593928,
chr21-14600620-14601432,
chr21-14602399-14603665,
chr21-14605867-14606115,
chr21-14606355-14606890,
chr21-14607509-14608092,
chr21-14608455-14608658,
chr21-14610191-14610518,
chr21-14616278-14617275,
chr21-14618083-14618876,
chr21-14619841-14620940,
chr21-14621456-14621947,
chr21-14630479-14630830,
chr21-14637278-14638363,
chr21-14643751-14644446,
chr21-14644943-14645306,
chr21-14649538-14649871,
chr21-14655397-14655824,
chr21-14659181-14659672,
chr21-14674832-14677302,
chr21-14677573-14679973,
chr21-14681044-14681579,
chr21-14682834-14683407,
chr21-14683766-14688956,
chr21-14690877-14693534,
chr21-14695752-14696224,
chr21-14699551-14700993,
chr21-14731536-14731839,
chr21-14733310-14733532,
chr21-14733859-14734983,
chr21-14735214-14740505,
chr21-14741240-14741827,
chr21-14742627-14743253,
chr21-14743590-14745739,
chr21-14751049-14751687,
chr21-14752293-14755665,
chr21-14757628-14757997,
chr21-14762012-14763864,
chr21-14764487-14764787,
chr21-14765555-14765610,
chr21-14766150-14766779,
chr21-14768089-14768942,
chr21-14771132-14775232,
chr21-14776599-14776961,
chr21-14777435-14777640,
chr21-14779142-14779611,
chr21-14789081-14789506,
chr21-14824996-14827058,
chr21-14830221-14830694,
chr21-14836978-14837548,
chr21-14841009-14842435,
chr21-14845869-14846303,
chr21-14850439-14850784,
chr21-14857468-14857884,
chr21-14861730-14867468,
chr21-14868004-14869396,
chr21-14869900-14872963,
chr21-14874201-14874958,
chr21-14949802-14950014,
chr21-14952341-14953601,
chr21-14953826-14954137,
chr21-14955906-14957615,
chr21-14957952-14958563,
chr21-14959237-14960295,
chr21-14968863-14969588,
chr21-15050583-15051369,
chr21-15051819-15053037,
chr21-15054708-15055248,
chr21-15057205-15057843,
chr21-15058151-15060232,
chr21-15060514-15067444,
chr21-15069437-15070135,
chr21-15071057-15071570,
chr21-15073893-15074094,
chr21-15149683-15150166,
chr21-15151490-15152324,
chr21-15155413-15155883,
chr21-15159358-15159865,
chr21-15163125-15163429,
chr21-15164026-15164374,
chr21-15164670-15165346,
chr21-15171644-15171827,
chr21-15172374-15174253,
chr21-15549401-15550208,
chr21-15551801-15554215,
chr21-15566134-15566282,
chr21-15566701-15567087,
chr21-15574421-15574823,
-
Co-expression with cohesin genes Rho = 0.2014
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.701
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.906
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: MCF-7,GM12878,K-562,TAMR-MCF7,H1-hESC,A-549,GM19238,HFF-hTERT,HeLa-S3,H9-hESC,H1-Mesenchymal,H1-Mesendoderm,HUES64
- Related loop:
chr21:14050000-14075000~~chr21:14475000-14500000,
chr21:14225000-14250000~~chr21:14525000-14550000,
chr21:14275000-14300000~~chr21:14475000-14500000,
chr21:14275000-14300000~~chr21:14600000-14625000,
chr21:14375000-14400000~~chr21:14500000-14525000,
chr21:14450000-14475000~~chr21:14600000-14625000,
chr21:14475000-14500000~~chr21:14675000-14700000,
chr21:14475000-14500000~~chr21:14725000-14750000,
chr21:14475000-14500000~~chr21:14825000-14850000,
chr21:14475000-14500000~~chr21:14950000-14975000,
chr21:14500000-14525000~~chr21:14600000-14625000,
chr21:14500000-14525000~~chr21:14725000-14750000,
chr21:14500000-14525000~~chr21:14825000-14850000,
chr21:14500000-14525000~~chr21:15150000-15175000,
chr21:14525000-14550000~~chr21:14675000-14700000,
chr21:14525000-14550000~~chr21:14725000-14750000,
chr21:14525000-14550000~~chr21:14750000-14775000,
chr21:14525000-14550000~~chr21:15050000-15075000,
chr21:14525000-14550000~~chr21:25450000-25475000,
chr21:14526513-14528106~~chr21:14545508-14547033,
chr21:14533231-14535623~~chr21:14685023-14689153,
chr21:14533236-14535518~~chr21:14762302-14764315,
chr21:14545597-14546983~~chr21:14675233-14677002,
chr21:14555961-14558184~~chr21:14685023-14689153,
chr21:14558737-14560030~~chr21:14577684-14578910,
chr21:14600000-14625000~~chr21:14725000-14750000,
chr21:14600000-14625000~~chr21:14775000-14800000,
chr21:14600000-14625000~~chr21:15150000-15175000,
chr21:14600000-14625000~~chr21:15550000-15575000,
chr21:14650000-14675000~~chr21:14850000-14875000,
chr21:14650000-14675000~~chr21:14950000-14975000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIH2A7IKF, 4DNFI8649RQJ, ENCSR662QKG, GSE118716, ENCSR499RVD, ENCSR410MDC, 4DNFIP25GZGA, 4DNFIWNNO89O, ENCSR981FNA, GSE97394, GSE80820, 4DNFIE8T8JZ8, 4DNFIJBJ6QVH, 4DNFI9YAVTI1, GSE52457, Direct, 4DNFIXWCLD4M, 4DNFISPUVQHA, 4DNFI1UEG1HD, ENCSR244BBG, ENCSR393LOP, 4DNFIPAF4PYT, 4DNFIVJ3IIQL, ENCSR527RXH, 4DNFIDKJFK2S, GSE105028, 4DNFIDBIEXI7
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: HL-60,OCI-AML-3,P3HR-1,K-562,MCF-10A
- Cohesin-DEGs, number of studies: 8
- Cohesin-DEGs, study: GSE140651,GSE111537,GSE101921,GSE131581,GSE154086,GSE131448
- Cohesin-DEGs, subunit: SMC1,Rad21,SA2,SMC3