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Basic information

CohesinDB ID: CDBG00009785

Gene Symbol: TMPRSS15

Ensembl ID: ENSG00000154646

Gene locus: chr21:18269115-18403785 Strand: -

Gene type: protein_coding

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): True

All evidenced type: Interaction,DEGs

Regulatory cohesin (double-evidenced): chr21-17352342-17352564, chr21-17352941-17353720, chr21-17360708-17361293, chr21-17364021-17364262, chr21-17368762-17369199, chr21-17370093-17370608, chr21-17371078-17371857, chr21-17650364-17650607, chr21-17660473-17661158, chr21-17661485-17661799, chr21-17662469-17662816, chr21-17668672-17669176, chr21-17673220-17674924, chr21-17676688-17681173, chr21-17683768-17683914, chr21-17685520-17685630, chr21-17688607-17690344, chr21-17691367-17691688, chr21-17693819-17694295, chr21-17694563-17695104, chr21-17923497-17927046, chr21-17929593-17930350, chr21-17930894-17931556, chr21-17938415-17938644, chr21-17944894-17945198, chr21-17946126-17946434, chr21-18040660-18041642, chr21-18109406-18109638, chr21-18116584-18116748, chr21-18234215-18234462, chr21-18244362-18246003, chr21-18248692-18249015, chr21-18249657-18250255, chr21-18265848-18266487, chr21-18279339-18279644, chr21-18281735-18282226, chr21-18293535-18297034, chr21-18298162-18298841, chr21-18300207-18300350, chr21-18305202-18305502, chr21-18312556-18312758, chr21-18317758-18317956, chr21-18319488-18319736, chr21-18329334-18329901, chr21-18330821-18331089, chr21-18335724-18336324, chr21-18338652-18338796, chr21-18340298-18340811, chr21-18350167-18350699, chr21-18357865-18358039, chr21-18368560-18369930, chr21-18370234-18370893, chr21-18371836-18372192, chr21-18372751-18374514, chr21-18380120-18380250, chr21-18382887-18383716, chr21-18384631-18385295, chr21-18387558-18388756, chr21-18391416-18392144, chr21-18394470-18394621, chr21-18402221-18402545, chr21-18449535-18450545, chr21-18460815-18461695, chr21-18468856-18469326, chr21-18484927-18485813, chr21-18493277-18493881, chr21-18494193-18494571, chr21-18495912-18496938, chr21-18498765-18501536, chr21-18511471-18511673, chr21-18517682-18518614, chr21-18521275-18523532, chr21-18523809-18525063, chr21-18725661-18725975, chr21-18732979-18733491, chr21-18741688-18741756, chr21-18743735-18744305, chr21-18748459-18748763, chr21-18788717-18789048, chr21-18791850-18792072, chr21-18796722-18796851, chr21-18798306-18798838, chr21-18800722-18802720, chr21-18820629-18820819, chr21-18827796-18827966, chr21-18831843-18833594, chr21-18839975-18840750, chr21-18901978-18903363, chr21-18906938-18907548, chr21-18912468-18912803, chr21-18913831-18914364, chr21-19024809-19025117, chr21-19045686-19046897, chr21-19325576-19326115, chr21-19326746-19327340, chr21-19328199-19328556, chr21-19340403-19340601, chr21-19504796-19504937, chr21-19507539-19509004, chr21-19510597-19511062, chr21-19512698-19513227, chr21-19513457-19513892, chr21-19517791-19518026, chr21-19523599-19524177, chr21-20030405-20030847, chr21-20031489-20032392, chr21-20035485-20036114, chr21-20037384-20038205, chr21-20039030-20039164, chr21-20039746-20040112, chr21-20040481-20041267, chr21-20044956-20045567, chr21-20048218-20048688, chr21-20049884-20050277,

Co-expression with cohesin genes Rho = 0.1155 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.942
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.902
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,MB157,Keratinocytes192627,Aorta,H1-Mesenchymal,Hepatocyte-H9,GM12878,K-562,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,NCI-H1437,Hep-G2,Kelly,H1-hESC,HCC1599,HUES64,SU-DHL-4,NPC-H9,Jurkat,CyT49-Gut,HFF-hTERT,HAP1

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI8649RQJ, GSE95015, ENCSR194SRI, 4DNFIMROE6N4, 4DNFIE8E4ANZ, 4DNFI5SUHCGZ, ENCSR852KQC, ENCSR361AYD, GSE103148, ENCSR410MDC, 4DNFIBM714BP, 4DNFIYD8LO9Z, ENCSR381DCY, 4DNFICSTCJQZ, GSE97394, 4DNFICEGAHRC, ENCSR587DSF, 4DNFIL9M97T2, 4DNFIE8T8JZ8, GSE52457, 4DNFIBT4EAKN, 4DNFI3A3VYWU, ENCSR658RQQ, Direct, 4DNFISPUVQHA, GSE116872, 4DNFIEJEFCAM, 4DNFI9815EEJ, 4DNFIQVMVRP6, ENCSR247RGI, 4DNFIVJ3IIQL, 4DNFIJ8JKKWJ, 4DNFIQ2687RT, 4DNFIFLJLIS5, ENCSR833CMG, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFINEQY95T, GSE58752, GSE105028, GSE116869, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: True

Involved cell types for DEG evidence: K-562,HeLa-S3,P3HR-1

Cohesin-DEGs, number of studies: 3

Cohesin-DEGs, study: GSE140651,GSE131448,GSE130558

Cohesin-DEGs, subunit: WAPL,SMC1,SA2

eachgene

Deatailed information for gene ENSG00000154646