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Basic information

CohesinDB ID: CDBG00009853

Gene Symbol: HSPA13

Ensembl ID: ENSG00000155304

Gene locus: chr21:14371114-14383146 Strand: -

Gene type: protein_coding

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): True

All evidenced type: Interaction,DEGs,

Regulatory cohesin (double-evidenced): chr21-13806228-13807204, chr21-13809209-13809482, chr21-13810125-13810345, chr21-13816164-13816623, chr21-14026851-14028433, chr21-14030739-14031244, chr21-14031633-14031954, chr21-14047133-14047213, chr21-14114309-14114670, chr21-14115777-14116583, chr21-14117430-14121451, chr21-14241467-14241660, chr21-14243210-14243271, chr21-14250162-14250413, chr21-14253316-14254447, chr21-14256459-14256802, chr21-14257889-14261023, chr21-14270403-14271030, chr21-14273688-14274371, chr21-14281105-14281959, chr21-14295215-14295291, chr21-14296029-14296203, chr21-14297072-14297309, chr21-14366465-14366972, chr21-14376765-14377390, chr21-14378678-14379134, chr21-14382340-14384384, chr21-14497768-14500804, chr21-14508533-14509068, chr21-14509849-14510528, chr21-14513466-14513776, chr21-14514091-14515251, chr21-14515813-14516554, chr21-14518725-14524191, chr21-14524873-14526196, chr21-14751049-14751687, chr21-14752293-14755665, chr21-14757628-14757997, chr21-14762012-14763864, chr21-14764487-14764787, chr21-14765555-14765610, chr21-14766150-14766779, chr21-14768089-14768942, chr21-14771132-14775232, chr21-14776599-14776961, chr21-14777435-14777640, chr21-14779142-14779611, chr21-14789081-14789506, chr21-14824996-14827058, chr21-14830221-14830694, chr21-14836978-14837548, chr21-14841009-14842435, chr21-14845869-14846303, chr21-14850439-14850784, chr21-14857468-14857884, chr21-14861730-14867468, chr21-14868004-14869396, chr21-14869900-14872963, chr21-14874201-14874958, chr21-14949802-14950014, chr21-14952341-14953601, chr21-14953826-14954137, chr21-14955906-14957615, chr21-14957952-14958563, chr21-14959237-14960295, chr21-14968863-14969588, chr21-15050583-15051369, chr21-15051819-15053037, chr21-15054708-15055248, chr21-15057205-15057843, chr21-15058151-15060232, chr21-15060514-15067444, chr21-15069437-15070135, chr21-15071057-15071570, chr21-15073893-15074094, chr21-15076585-15077061, chr21-15079366-15079615, chr21-15080508-15081008, chr21-15081479-15081992, chr21-15084460-15085231, chr21-15149683-15150166, chr21-15151490-15152324, chr21-15155413-15155883, chr21-15159358-15159865, chr21-15163125-15163429, chr21-15164026-15164374, chr21-15164670-15165346, chr21-15171644-15171827, chr21-15172374-15174253, chr21-15480544-15485701, chr21-15486435-15487318, chr21-15495910-15496512, chr21-15585495-15588247, chr21-15590091-15590381, chr21-15590652-15594426, chr21-15596889-15597197, chr21-15726005-15726347, chr21-15726744-15727018, chr21-15728664-15733925, chr21-15734927-15736334, chr21-15737261-15737766, chr21-15741172-15745156, chr21-15748731-15750124, chr21-15801204-15801900, chr21-15804362-15804554, chr21-15807461-15807690, chr21-15809823-15810205, chr21-15812438-15812641, chr21-15814958-15815592, chr21-15820922-15821240, chr21-15824259-15827480, chr21-15827702-15827852, chr21-15828618-15828901, chr21-15834852-15835348, chr21-15837530-15838161, chr21-15841385-15842641, chr21-15845569-15846660, chr21-15848382-15849717, chr21-15876479-15876649, chr21-15891358-15891425, chr21-15893413-15897253, chr21-15959345-15959416, chr21-15960799-15961198, chr21-15966662-15967056, chr21-15967663-15968780, chr21-16055093-16055357, chr21-16060983-16061574, chr21-16064985-16065299, chr21-16069027-16069375, chr21-16069741-16074239, chr21-16179066-16180618, chr21-16181053-16181397, chr21-16182009-16182569, chr21-16184082-16184512, chr21-16185564-16186135, chr21-16186787-16187211, chr21-16187950-16188513, chr21-16189420-16189727, chr21-16192814-16197732, chr21-16198035-16199514, chr21-16199967-16200171,

Co-expression with cohesin genes Rho = 0.5997 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.294
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.886
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: HEK293T,GM12878,IMR-90,K-562,MB157,H1-hESC,A-549,HFF-hTERT,HAP1,HFFc6,Motor-Neuron,NaiveB,HeLa-S3,H1-Trophectoderm,H9-hESC,H1-Mesenchymal

Cohesin-loop type: HiChIP,HiC,Direct

Cohesin-loop study: 4DNFI8649RQJ, 4DNFI3CFMRID, ENCSR662QKG, GSE95015, 4DNFIWZEN3FF, 4DNFI5CGQ46V, 4DNFIMROE6N4, 4DNFIE8E4ANZ, ENCSR499RVD, 4DNFIB7QTIMH, GSE116869, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR852KQC, GSE84022, 4DNFI7H4II2V, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIEYQ5ZIR, 4DNFIBM714BP, ENCSR866FWQ, 4DNFIYD8LO9Z, 4DNFICEGAHRC, 4DNFI9YAVTI1, GSE52457, 4DNFI3A3VYWU, Direct, 4DNFI1UEG1HD, ENCSR244BBG, 4DNFIZF1KI43, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, 4DNFIQVMVRP6, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, 4DNFIFLJLIS5, GSE105028, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIH7TH4MF, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: True

Involved cell types for DEG evidence: HL-60,SLK,P3HR-1,K-562,MCF-10A,HeLa-S3

Cohesin-DEGs, number of studies: 7

Cohesin-DEGs, study: GSE140651,GSE131581,GSE154086,GSE131448,GSE138937,GSE130558

Cohesin-DEGs, subunit: SMC3,SA2,WAPL,CTCF,SMC1,Rad21

eachgene

Deatailed information for gene ENSG00000155304