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Basic information

CohesinDB ID: CDBG00009792

Gene Symbol: ATP5PF

Ensembl ID: ENSG00000154723

Gene locus: chr21:25724479-25735673 Strand: -

Gene type: protein_coding

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): True

All evidenced type: Interaction,DEGs

Regulatory cohesin (double-evidenced): chr21-25103797-25104160, chr21-25107468-25108444, chr21-25375559-25376065, chr21-25383848-25387605, chr21-25387847-25388717, chr21-25395973-25396887, chr21-25399514-25400754, chr21-25401827-25402550, chr21-25420705-25426209, chr21-25426619-25427030, chr21-25427747-25428210, chr21-25428548-25429008, chr21-25434009-25434368, chr21-25439742-25439939, chr21-25450123-25450517, chr21-25451270-25452779, chr21-25453162-25454024, chr21-25456209-25458906, chr21-25459433-25460303, chr21-25461860-25462035, chr21-25462477-25463122, chr21-25463688-25465068, chr21-25466894-25467363, chr21-25467956-25468249, chr21-25473521-25474086, chr21-25572281-25575261, chr21-25576227-25589346, chr21-25589610-25591105, chr21-25591791-25592728, chr21-25595802-25596358, chr21-25600851-25601124, chr21-25606719-25610187, chr21-25614176-25615182, chr21-25624549-25624749, chr21-25626132-25626377, chr21-25626696-25627327, chr21-25638808-25641127, chr21-25642332-25642777, chr21-25646355-25647152, chr21-25647707-25648230, chr21-25721623-25722022, chr21-25731829-25732870, chr21-25733103-25733519, chr21-25733724-25736727, chr21-25800560-25802279, chr21-26714761-26718662, chr21-26824624-26825033, chr21-26826754-26827193, chr21-26832682-26836085, chr21-26836642-26836862, chr21-26837135-26838300, chr21-26839542-26841526, chr21-26841743-26847812, chr21-26848196-26852813,

Co-expression with cohesin genes Rho = 0.3149 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.189
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.824
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: H9-endodermal,IMR-90,MCF-10A,MB157,DU145,Keratinocytes192627,H1-Mesenchymal,Olfactory,Hepatocyte-H9,MCF-7,HEK293T,SARS-Cov2-olfactory,GM12878,MSiPS,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,LNCaP,H9-hESC,Primed-hESC,iPSC,Liver,ARPE-19,REC-1,Hep-G2,Kelly,H1-hESC,HCC1599,HT-1376,Motor-Neuron,NaiveB,HUES64,SU-DHL-4,CyT49-hESC,HUVEC,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,CC-2551,HFF-hTERT,HAP1

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIQYQWPF5, GSE95015, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, ENCSR794RDS, ENCSR852KQC, 4DNFIDSWKFF5, GSE103148, 4DNFI7H4II2V, 4DNFIZ4F74QR, ENCSR350NJV, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, ENCSR113OIR, 4DNFIKYXMF1E, GSE99541, ENCSR668RDP, 4DNFIL5K3MA1, GSE97394, 4DNFICEGAHRC, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, ENCSR658RQQ, 4DNFIK61ILGM, GSE108869, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, GSE105028, 4DNFIBKZK63V, 4DNFIQWD8ZYD, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, ENCSR499RVD, 4DNFIB7QTIMH, GSE126792, ENCSR478BMT, GSE69643, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR587DSF, 4DNFIIMZB6Y9, GSE80820, GSE52457, 4DNFIBT4EAKN, Direct, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, 4DNFI9815EEJ, ENCSR778FXH, 4DNFI9ZWZ5BS, 4DNFIVJ3IIQL, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, GSE84022, 4DNFIPV5KFMK, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIFHU75I5, 4DNFIYD8LO9Z, ENCSR444BAR, 4DNFIL9M97T2, ENCSR550JLK, 4DNFI3A3VYWU, 4DNFIJ7OAIFQ, 4DNFIX4PJKXZ, 4DNFIALNLR78, 4DNFIYDBBSE3, 4DNFIEJEFCAM, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, GSE48592, 4DNFIE5TEYK7, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, ENCSR094EIC, GSE58752, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFIILDWK8M, ENCSR866FWQ, 4DNFI6EIFUZI, 4DNFII6AN691, ENCSR381DCY, ENCSR981FNA, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFI8JFOAJT, 4DNFIOCW5AEM, 4DNFIQVMVRP6, 4DNFIC3HAU11, ENCSR247RGI, ENCSR110JOO, 4DNFI5LCW273, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM, 4DNFIVSCH2CH

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: True

Involved cell types for DEG evidence: HL-60,SLK,HeLa-S3

Cohesin-DEGs, number of studies: 5

Cohesin-DEGs, study: GSE131581,GSE138937,GSE130558

Cohesin-DEGs, subunit: WAPL,CTCF,Rad21,SA2

eachgene

Deatailed information for gene ENSG00000154723