Deatailed information for gene ENSG00000225298
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00025915
- Gene Symbol: LINC00113
- Ensembl ID: ENSG00000225298
-
Gene locus: chr21:27722378-27751233
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
chr21-26754901-26755319,
chr21-26756401-26757018,
chr21-26761360-26762618,
chr21-26764343-26764463,
chr21-26765149-26765417,
chr21-26765908-26766700,
chr21-26767730-26768147,
chr21-26768608-26771257,
chr21-26824624-26825033,
chr21-26826754-26827193,
chr21-26832682-26836085,
chr21-26836642-26836862,
chr21-26837135-26838300,
chr21-26839542-26841526,
chr21-26841743-26847812,
chr21-26848196-26852813,
chr21-26853060-26853350,
chr21-26854502-26857883,
chr21-26858097-26858651,
chr21-26867750-26868009,
chr21-26871783-26872605,
chr21-26949868-26950099,
chr21-26951560-26951869,
chr21-26952332-26953074,
chr21-26954207-26955169,
chr21-26958780-26959264,
chr21-26961136-26968924,
chr21-26972162-26972628,
chr21-27023138-27026303,
chr21-27026520-27027066,
chr21-27030460-27030801,
chr21-27036692-27036976,
chr21-27045002-27045130,
chr21-27046439-27048534,
chr21-27049110-27049535,
chr21-27201219-27202078,
chr21-27202334-27203054,
chr21-27206351-27206965,
chr21-27212161-27212411,
chr21-27212637-27214873,
chr21-27215313-27215599,
chr21-27218751-27221382,
chr21-27223327-27223993,
chr21-27224651-27225725,
chr21-27299811-27301698,
chr21-27302530-27302899,
chr21-27305606-27308114,
chr21-27315387-27315916,
chr21-27555979-27556487,
chr21-27557265-27557849,
chr21-27561020-27561913,
chr21-27563002-27566992,
chr21-27567650-27574605,
chr21-27719405-27719658,
chr21-27722043-27722380,
chr21-27733980-27734822,
chr21-27736814-27737090,
chr21-27741787-27742039,
chr21-28025094-28025504,
chr21-28042682-28043085,
chr21-28048260-28048549,
chr21-28050232-28054706,
chr21-28055025-28055673,
chr21-28057219-28057369,
chr21-28058256-28059473,
chr21-28060090-28060269,
chr21-28062272-28062979,
chr21-28064474-28066923,
chr21-28067534-28068121,
chr21-28068492-28070097,
chr21-28177209-28177514,
chr21-28184738-28184897,
chr21-28191829-28192284,
chr21-28192770-28193616,
chr21-28196422-28197023,
chr21-28227105-28227445,
chr21-28227896-28231619,
chr21-28234195-28235962,
chr21-28237523-28237929,
chr21-28239422-28239738,
chr21-28240623-28241036,
chr21-28247181-28248074,
chr21-28325514-28326311,
chr21-28332778-28340251,
chr21-28341277-28341586,
chr21-28342232-28342714,
chr21-28343843-28344097,
chr21-28426062-28428543,
chr21-28430646-28433389,
chr21-28435933-28437451,
chr21-28439119-28440662,
chr21-28441650-28446617,
chr21-28446900-28448101,
chr21-28501658-28501980,
chr21-28509074-28509343,
chr21-28515785-28518121,
chr21-28518339-28518971,
chr21-28519958-28520245,
chr21-28520608-28523119,
chr21-28523395-28523853,
chr21-28536526-28542170,
chr21-28543998-28544380,
chr21-28547810-28548217,
chr21-28549840-28550779,
chr21-28581117-28581680,
chr21-28587521-28588238,
chr21-28589885-28590379,
chr21-28590711-28591217,
chr21-28595856-28596319,
chr21-28726042-28726237,
chr21-28728325-28728960,
chr21-28730369-28730658,
chr21-28734874-28735184,
chr21-28737724-28738809,
chr21-28739033-28739334,
chr21-28740627-28747447,
chr21-28749634-28749909,
chr21-28931049-28931107,
chr21-28938796-28941472,
chr21-28944300-28944655,
-
Co-expression with cohesin genes Rho = 0.1573
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.966
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.895
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,MB157,Keratinocytes192627,H1-Mesenchymal,H1-Mesendoderm,Olfactory,SARS-Cov2-olfactory,K-562,A-549,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,iPSC,REC-1,OCI-AML-3,Hep-G2,H1-hESC,HCC1599,Motor-Neuron,U-937,HUES64,HUVEC,CyT49-hESC,HL-60,RT-112,CyT49-endoderm,KBM-7,CyT49-Gut,CC-2551,HAP1,HFF-hTERT
- Related loop:
chr21:25600000-25625000~~chr21:27700000-27725000,
chr21:26750000-26775000~~chr21:27700000-27725000,
chr21:26825000-26850000~~chr21:27700000-27725000,
chr21:26850000-26875000~~chr21:27700000-27725000,
chr21:26950000-26975000~~chr21:27700000-27725000,
chr21:27025000-27050000~~chr21:27700000-27725000,
chr21:27200000-27225000~~chr21:27700000-27725000,
chr21:27300000-27325000~~chr21:27700000-27725000,
chr21:27550000-27575000~~chr21:27700000-27725000,
chr21:27700000-27725000~~chr21:28025000-28050000,
chr21:27700000-27725000~~chr21:28050000-28075000,
chr21:27700000-27725000~~chr21:28325000-28350000,
chr21:27700000-27725000~~chr21:28500000-28525000,
chr21:27700000-27725000~~chr21:28725000-28750000,
chr21:27700000-27725000~~chr21:28925000-28950000,
chr21:27725000-27750000~~chr21:28025000-28050000,
chr21:27725000-27750000~~chr21:28325000-28350000,
chr21:27750000-27775000~~chr21:28025000-28050000,
chr21:27750000-27775000~~chr21:28050000-28075000,
chr21:27750000-27775000~~chr21:28175000-28200000,
chr21:27750000-27775000~~chr21:28225000-28250000,
chr21:27750000-27775000~~chr21:28325000-28350000,
chr21:27750000-27775000~~chr21:28425000-28450000,
chr21:27750000-27775000~~chr21:28500000-28525000,
chr21:27750000-27775000~~chr21:28525000-28550000,
chr21:27750000-27775000~~chr21:28575000-28600000,
chr21:27750000-27775000~~chr21:28725000-28750000,
chr21:27750000-27775000~~chr21:28925000-28950000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, GSE43070, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, ENCSR794RDS, ENCSR852KQC, 4DNFIZ4F74QR, 4DNFI7H4II2V, ENCSR350NJV, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, 4DNFI9VXTBE2, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, 4DNFIL5K3MA1, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFIJ5DQZVK, 4DNFISPUVQHA, 4DNFIK61ILGM, GSE108869, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, GSE105028, 4DNFIQWD8ZYD, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, ENCSR499RVD, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFIIMZB6Y9, GSE52457, 4DNFIBT4EAKN, Direct, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, 4DNFI9815EEJ, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDZT7PR8, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIR8OU6QJ, 4DNFI6CWNUFL, 4DNFIE8E4ANZ, GSE120294, 4DNFIW8TIFI5, 4DNFIMEG1QIC, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIFHU75I5, 4DNFIYD8LO9Z, ENCSR444BAR, 4DNFIL9M97T2, ENCSR550JLK, 4DNFI3A3VYWU, 4DNFIM2BMJ33, GSE165038, 4DNFIALNLR78, 4DNFIYDBBSE3, ENCSR379CII, 4DNFIEJEFCAM, 4DNFIE5TEYK7, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, ENCSR094EIC, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR866FWQ, 4DNFI6EIFUZI, 4DNFII6AN691, GSE111537, GSE131580, 4DNFIOUSETUP, 4DNFI6JJQKFJ, GSE101921, ENCSR228TUX, 4DNFI8JFOAJT, 4DNFIQVMVRP6, 4DNFI5LCW273, 4DNFINEQY95T, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence: Keratinocytes
- Cohesin-DEGs, number of studies: 2
- Cohesin-DEGs, study: GSE83870
- Cohesin-DEGs, subunit: SMC1,SMC3